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Practical Tools For Innovation
O'Reilly Bioinformatics Technology Conference
January 28-31, 2002 -- Tucson, AZ
Chambered Nautilus

Tutorial

Beginning Perl for Bioinformatics

James Tisdall

Track: Bioinformatics Tutorials
Date: Monday, January 28
Time: 8:30am - 12:00pm
Location: Canyon IV

This three hour tutorial, based on the O'Reilly book of the same name, is designed to introduce biologists to bioinformatics programming by using real biological data and practically useful exercises including:
  • DNA and protein sequence data
  • Motif finding
  • Modeling mutation
  • Genbank data extraction
  • PDB data extraction
  • BLAST data extraction
  • Regular expressions
  • Controlling other bioinformatics programs
  • Finding and using modules

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