view the
presentations slides for this session here.
Biopython (www.biopython.org) is an international collaboration to
collect and produce open source bioinformatics tools written in the
Python programming language. Founded in 1999 it now has users and
developers from four different continents. Biopython is one of the
projects developed under the umbrella of the Open Bioinformatics
Foundation (www.open-bio.org).
This is an exciting time in the Biopython. We are approaching the 1.0
release. The distribution includes interfaces to query local and
distributed bioinformatics tools and databases, data structures for
manipulating biological resources, a generalized parsing framework
which unifies the many flat-file formats, libraries for working with
different database systems, and servers to provide remote access to
these services.
The presentation will start with an overview of the Biopython project
then show how the different aspects can be used to build a
bioinformatics platform for a research group. It will end with
pointers to other Python projects in the life sciences, including
projects in structural biology and chemical informatics.