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Canyon II |
Canyon III |
Canyon IV |
Canyon I |
Aster II |
Finger Rock I, II & III |
| Monday, January 28
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Canyon II |
Canyon III |
Canyon IV |
Canyon I |
Aster II |
Finger Rock I, II & III |
| 7:00am |
Breakfast |
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| 8:30am |
Parsing in Perl for Bioinformatics
Damian Conway |
BLAST Programming
Thomas Madden |
Beginning Perl for Bioinformatics
James Tisdall |
Biology for Computer Professionals
Nathan Torkington; Cynthia Gibas; Lorrie LeJeune; Jennifer Weller |
Perl and Bioperl: Tools for Automated Analysis of Biological Sequence Data
Peter Schattner, Ph.D. |
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| 12:00pm |
Lunch Break |
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| 1:30pm |
Parsing in Perl for Bioinformatics (con't) |
Using NCBI Human Genome Resources
Donna Maglott |
SOLD OUT: Perl and Bioperl: Tools for Automated Analysis of Biological Sequence Data
Peter Schattner, Ph.D. |
Linux Clusters for Biologists 101: Building Clusters with ROCKS
Glen Otero |
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| 7:30pm |
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Bioinformatics Quiz Show
Nathan Torkington; Lorrie LeJeune |
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| Tuesday, January 29
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Canyon II |
Canyon III |
Canyon IV |
Canyon I |
Aster II |
Finger Rock I, II & III |
| 7:00am |
Breakfast |
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| 8:30am |
Keynote: Open Source Bioinformatics
Ewan Birney |
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| 10:00am |
AM Break |
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| 10:30am |
Optimal Algorithm Selection for Bioinformatics
Martin Gollery |
IT Challenges in the Post-Genomic Era
Siamak Zadeh, Ph.D. |
From SNP to Structure: A Tour Through the World of Bioinformatics
Sandra Porter; Linnea Fletcher, Ph.D. |
Interactive Data Visualization and Exploration: Concepts, Techniques, Applications to Bioinformatics, and Future Prospects
John Hotchkiss |
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| 11:15am |
High-performance Proteomic Analysis: Challenges and Solutions
Peter St. Onge |
UNIX-based Mac OS X as a Full-Featured Bioinformatics Development and Analysis Platform
Sean Fagan; Travis Brown |
Bioinformatics in Education
Uwe Hilgert, Ph.D. |
Genomic Data Visualization
Timothy Kunau |
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| 12:00pm |
Lunch Break |
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| 1:00pm |
Keynote: Bioinformatics - Building a Nation from a Land of City States
Lincoln D. Stein |
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| 1:45pm |
Break |
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| 2:15pm |
BioCORBA: Integrating Cross-Language Bioinformatics Solutions
Jason Stajich |
Working With Computer Hardware Vendors
Daniel Joy |
Synthesizing Information About the Evolutionary Relationships of All of Life: The Tree of Life Web Project and Related Phyloinformatics Efforts
David Maddison |
AI Techniques for Microarray Data Analysis
Ben Goertzel |
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| 3:00pm |
Biopython
Andrew Dalke |
The Future of Information Dissemination for Bioinformatics: How Can Publishers Add Value?
Nigel Fletcher-Jones; Lorrie LeJeune; Christopher Thorpe; Bernadette Toner |
Tree of Life Web Project: Implementing an Open-source Database and Toolset for Sharing Phylogenetic and Other Biological Information via the Web
Travis Wheeler |
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| 3:45pm |
Break |
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| 4:15pm |
Biopython (con't): Martel, Parsing and Bioformats
Andrew Dalke |
Developing a Strategy for Commercializing Open Source Bioinformatics Tools
Tania Broveak Hide |
Speedup at What Cost? An Evaluation of Heuristic vs. Complete Homology Search Techniques
Christopher Dwan |
Panel: Academic Freedom Collides with the Bayh/Dole Amendment
Cynthia Gibas; Andrew Dalke; Michael J. Martin; Jennifer Weller |
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| 5:00pm |
J2EE Architecture for Informatics Support of Genomic Sequencing
Judith Cohn |
Distributed Computing in the Life Sciences
Yury Rozenman |
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| 5:45pm |
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Exhibitor Reception: Networking on the Night Shift |
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| Wednesday, January 30
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| |
Canyon II |
Canyon III |
Canyon IV |
Canyon I |
Aster II |
Finger Rock I, II & III |
| 7:00am |
Breakfast |
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| 8:30am |
Keynote: Integrating Gene Expression Data and Genome Sequence Data
Terry Gaasterland |
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| 10:30am |
Embedding of Data and Analysis Results Using the MDB Web API
Jesus Castagnetto |
Bioinformatics.Org and Bioinformatics: Past, Present and Future
J. W. Bizzaro |
A Framework for Sharing Web-distributed Bioinformatics Services
Doug Tidwell |
Computing Strategies for the Interpretation of Mass Spectral Data for Proteomics Applications
William Gleason |
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|
| 11:15am |
Data Integration for Function Discovery
Keith Allen, Ph.D. |
The Project Management System at Bioinfomatics.Org
Gary Van Domselaar |
Building Production Grade Linux Clusters for Life Science Informatics
Chris Dagdigian |
Cross Platform Data Acquisition and Biological Analysis in the Drug Discovery Process
Matthew Frome |
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| 12:00pm |
Lunch Break |
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| 1:00pm |
Keynote: Saccharomyces cerevisiae - Some Assembly Required
Christopher Hogue, Ph.D. |
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| 1:45pm |
Break |
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| 2:15pm |
Which Sequence Should I Target? The Advantages of an Integrated Platform in Structural Proteomics
Craig Kim, Ph.D. |
DHTML and Scalable Vector Graphics in Bioinformatics
Malay Kumar Basu |
A Distributed Computing Environment for High Throughput Genomics
Christopher Dwan |
Panel: Open Data/Open Source
Annalee Newitz; Ewan Birney; Steven Brenner; Ann Loraine |
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| 3:00pm |
Using the NCBI C++ ToolKit in the Development of the BIND Database
Doron Betel |
PyMOL & FreeMOL: Leveraging Molecular Visualization to Create an Open Biopharmaceutical Computing Environment
Warren L. DeLano |
High Throughput Analysis in Model Organism Genomics: The Bulk Data Pipeline To Rat Genome Database
Dean Pasko |
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| 3:45pm |
Break |
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| 4:15pm |
Functional Genomics: Integration of Experimental Results With Online Annotation Databases
Michael Caudy, Ph.D.; Lincoln D. Stein; James Tisdall |
The ERATO Systems Biology Workbench Project: A Simplified Framework for Application Intercommunication
Michael Hucka, Ph.D. |
ISYS: The Employment of Loose Coupling to Achieve Robust Integration Across Biological Research Areas
Damian Gessler |
Requirements Analysis in Bioinformatics: Experiences in Communications between Computer and Life Scientists
Martina Stromvik |
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| 5:00pm |
|
Bioinformatics Lightning Talks |
There and Back Again: A Journey through the Protein Folding
Howard Feldman |
State of the Art in Integrative Bioinformatics
Shankar Subramaniam |
|
Poster Sessions |
| 7:00pm |
Quantum Superpositions: Parallel Programming in Serial Languages
Damian Conway |
Benjamin Franklin Award |
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| Thursday, January 31
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| |
Canyon II |
Canyon III |
Canyon IV |
Canyon I |
Aster II |
Finger Rock I, II & III |
| 7:00am |
Breakfast |
|
|
|
|
Poster Sessions |
| 8:30am |
Keynote: NCBI in the Genome Era
James Ostell, Ph.D. |
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|
| 10:30am |
An Introduction to Exploring Genomes and Mining Microarrays
Michael Deyholos |
Update on I3C
Tim Clark |
The Distributed Sequence Annotation System (DAS)
Lincoln D. Stein |
Legal Issues Related to Bioinformatics
Dan Appelman |
|
|
| 11:15am |
First Steps Toward a Computational Biology of Function: the Alpha Project.
Roger Brent |
TechArc
Krista Miller; Brian Gilman |
G2G: A Peer-to-Peer Architecture for Gene Expression Data
Jason Stewart |
Use of Open Source Databases in Clinical Trials
Dennis Salguero; Karla Salguero |
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| 12:00pm |
Lunch Break |
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| 1:00pm |
Keynote: Integrative Systems Biology: Genomics, Proteomics, and Computation
Leroy Hood, Ph.D. |
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| 1:45pm |
Break |
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| 2:15pm |
Lightning Talks
R. Geoffrey Avery |
Roadmap
Eric Neumann |
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| 3:00pm |
|
Proteomics Workgroup |
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| 3:45pm |
Town Hall |
Pathways & Ontologies Workgroup |
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